org.jmol.adapter.readers.simple
Date: 2019-10-22

# Package org.jmol.adapter.readers.simple

- Class Summary
  Class | Description
  --- | ---
  AlchemyReader | TRIPOS simple Alchemy reader.
  AmpacReader | A reader for AMPAC output.
  CubeReader | Gaussian cube file format http://www.cup.uni-muenchen.de/oc/zipse/lv18099/orb_MOLDEN.html this is good because it is source code http://ftp.ccl.net/cca/software/SOURCES/C/scarecrow/gcube2plt.c http://www.nersc.gov/nusers/resources/software/apps/chemistry/gaussian/g98/00000430.htm distances are in Bohrs because we are reading Gaussian cube OUTPUT files not Gaussian cube INPUT files.
  FoldingXyzReader | This reader is for current.xyz files generated by Folding@Home project (see http://folding.stanford.edu) I have not found a precise description of the file format.
  GhemicalMMReader | Reads Ghemical ( http://www.uku.fi/~thassine/ghemical) molecular mechanics (*.mm1gp) files.
  HyperChemReader | Support for .hin, HyperChem's native file format.
  InputReader |
  JmeReader |
  JSONReader |
  MopacArchiveReader | Mopac Archive reader -- presumes "zMatrix" is really Cartesians use FILTER "NOCENTER" to NOT center atoms in unit cell use CENTROID for complete molecules with centroids within unit cell use PACKED CENTROID for complete molecules with any atoms within unit cell
  MopacReader | Reads Mopac 93, 6, 7, 2002, or 2009 output files
  TinkerReader | simple Tinker format requires Tinker:: prefix: load Tinker::mydata.xyz 1/2014 hansonr@stolaf.edu